VirusSeq SARS-CoV-2 Genome Sequences

The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.

Additional Information

Field	Value
Data last updated	August 23, 2025
Metadata last updated	August 23, 2025
Created	August 23, 2025
Format	unknown
License	Creative Commons Attribution
Datastore active	False
Datastore contains all records of source file	False
Has views	False
Id	bb70fa9a-dc84-4832-b95a-15071ca2fc65
Package id	515e0188-31d0-4459-bcbf-cde2024b62b1
Position	0
State	active

Field

Value

Data last updated

August 23, 2025

Metadata last updated

August 23, 2025

Created

August 23, 2025

Format

unknown

License

Creative Commons Attribution

Datastore active

False

Datastore contains all records of source file

False

Has views

False

bb70fa9a-dc84-4832-b95a-15071ca2fc65

Package id

515e0188-31d0-4459-bcbf-cde2024b62b1

Position

State

active

Package	Version	Homepage	Summary
alembic	1.13.2	https://alembic.sqlalchemy.org	A database migration tool for SQLAlchemy.
annotated-types	0.7.0	None	Reusable constraint types to use with typing.Annotated
arrow	1.3.0	None	Better dates & times for Python
asttokens	3.0.0	https://github.com/gristlabs/asttokens	Annotate AST trees with source code positions
async-timeout	4.0.3	https://github.com/aio-libs/async-timeout	Timeout context manager for asyncio programs
attrs	25.3.0	None	Classes Without Boilerplate
Babel	2.15.0	https://babel.pocoo.org/	Internationalization utilities
Beaker	1.13.0	https://beaker.readthedocs.io/	A Session and Caching library with WSGI Middleware
beautifulsoup4	4.13.4	None	Screen-scraping library
binaryornot	0.4.4	https://github.com/audreyr/binaryornot	Ultra-lightweight pure Python package to check if a file is binary or text.
bleach	6.1.0	https://github.com/mozilla/bleach	An easy safelist-based HTML-sanitizing tool.
blinker	1.8.2	None	Fast, simple object-to-object and broadcast signaling
boto3	1.40.1	https://github.com/boto/boto3	The AWS SDK for Python
botocore	1.40.1	https://github.com/boto/botocore	Low-level, data-driven core of boto 3.
cached-property	2.0.1	https://github.com/pydanny/cached-property	A decorator for caching properties in classes.
cachelib	0.13.0	https://github.com/pallets-eco/cachelib/	A collection of cache libraries in the same API interface.
cachetools	6.2.0	https://github.com/tkem/cachetools/	Extensible memoizing collections and decorators
certifi	2024.7.4	https://github.com/certifi/python-certifi	Python package for providing Mozilla's CA Bundle.
chardet	5.2.0	https://github.com/chardet/chardet	Universal encoding detector for Python 3
charset-normalizer	3.3.2	https://github.com/Ousret/charset_normalizer	The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet.
ckan	2.11.3	http://ckan.org/	CKAN Software
ckanapi	4.8	https://github.com/ckan/ckanapi	A command line interface and Python module for accessing the CKAN Action API
ckanext-dcat	2.4.0	None	Plugins for exposing and consuming DCAT metadata on CKAN
ckanext-excelforms	1.0.0		Excel forms for entering data into Table Designer tables
ckanext-harvest	1.6.1	None	Harvesting interface plugin for CKAN, plus harvester for other CKAN sites
ckanext-scheming	3.1.0	https://github.com/ckan/ckanext-scheming	Easy, sharable custom CKAN schemas
ckanext-theme-dj	0.0.1	None	None
ckanext-validation	2.2.0	None	Data description and validation for CKAN with Frictionless Data tools.
ckanext-xloader	2.1.0	None	Express Loader - quickly load data into CKAN DataStore
ckantoolkit	0.0.7	https://github.com/ckan/ckantoolkit	UNKNOWN
click	8.1.7	https://palletsprojects.com/p/click/	Composable command line interface toolkit
cookiecutter	2.6.0	https://github.com/cookiecutter/cookiecutter	A command-line utility that creates projects from project templates, e.g. creating a Python package project from a Python package project template.
dataflows-tabulator	1.54.3	https://github.com/akariv/tabulator-py	Consistent interface for stream reading and writing tabular data (csv/xls/json/etc)
decorator	5.2.1	None	Decorators for Humans
docopt	0.6.2	http://docopt.org	Pythonic argument parser, that will make you smile
dominate	2.9.1	None	Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API.
et_xmlfile	2.0.0	https://foss.heptapod.net/openpyxl/et_xmlfile	An implementation of lxml.xmlfile for the standard library
exceptiongroup	1.3.0	None	Backport of PEP 654 (exception groups)
executing	2.2.0	https://github.com/alexmojaki/executing	Get the currently executing AST node of a frame, and other information
feedgen	1.0.0	https://lkiesow.github.io/python-feedgen	Feed Generator (ATOM, RSS, Podcasts)
Flask	3.0.3	None	A simple framework for building complex web applications.
flask-babel	4.0.0	https://github.com/python-babel/flask-babel	Adds i18n/l10n support for Flask applications.
Flask-DebugToolbar	0.16.0	None	A toolbar overlay for debugging Flask applications.
Flask-Login	0.6.3	https://github.com/maxcountryman/flask-login	User authentication and session management for Flask.
Flask-Session	0.8.0	None	Server-side session support for Flask
Flask-WTF	1.2.1	None	Form rendering, validation, and CSRF protection for Flask with WTForms.
FormEncode	2.1.1	https://www.formencode.org/	"HTML form validation, generation, and conversion package"
frictionless	5.18.0	None	Data management framework for Python that provides functionality to describe, extract, validate, and transform tabular data
frozendict	2.4.6	https://github.com/Marco-Sulla/python-frozendict	A simple immutable dictionary
geomet	1.1.0	None	Pure Python conversion library for common geospatial data formats
greenlet	3.0.3	https://greenlet.readthedocs.io/	Lightweight in-process concurrent programming
humanize	4.12.3	None	Python humanize utilities
idna	3.7	None	Internationalized Domain Names in Applications (IDNA)
ijson	3.4.0	None	Iterative JSON parser with standard Python iterator interfaces
importlib_metadata	8.0.0	None	Read metadata from Python packages
ipython	8.37.0	None	IPython: Productive Interactive Computing
isodate	0.7.2	None	An ISO 8601 date/time/duration parser and formatter
itsdangerous	2.2.0	None	Safely pass data to untrusted environments and back.
jedi	0.19.2	https://github.com/davidhalter/jedi	An autocompletion tool for Python that can be used for text editors.
Jinja2	3.1.6	None	A very fast and expressive template engine.
jmespath	1.0.1	https://github.com/jmespath/jmespath.py	JSON Matching Expressions
jsonlines	4.0.0	https://github.com/wbolster/jsonlines	Library with helpers for the jsonlines file format
jsonschema	4.25.0	None	An implementation of JSON Schema validation for Python
jsonschema-specifications	2025.4.1	None	The JSON Schema meta-schemas and vocabularies, exposed as a Registry
linear-tsv	1.1.0	https://github.com/solidsnack/tsv	Line-oriented, tab-separated value format
lxml	5.2.2	https://lxml.de/	Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
Mako	1.3.5	https://www.makotemplates.org/	A super-fast templating language that borrows the best ideas from the existing templating languages.
Markdown	3.6	None	Python implementation of John Gruber's Markdown.
markdown-it-py	3.0.0	None	Python port of markdown-it. Markdown parsing, done right!
marko	2.2.0	None	A markdown parser with high extensibility.
MarkupSafe	2.1.5	https://palletsprojects.com/p/markupsafe/	Safely add untrusted strings to HTML/XML markup.
matplotlib-inline	0.1.7	None	Inline Matplotlib backend for Jupyter
mdurl	0.1.2	None	Markdown URL utilities
msgspec	0.18.6	https://jcristharif.com/msgspec/	A fast serialization and validation library, with builtin support for JSON, MessagePack, YAML, and TOML.
mypy	1.10.1	https://www.mypy-lang.org/	Optional static typing for Python
mypy-extensions	1.0.0	https://github.com/python/mypy_extensions	Type system extensions for programs checked with the mypy type checker.
nose	1.3.7	http://readthedocs.org/docs/nose/	nose extends unittest to make testing easier
openpyxl	3.1.5	https://openpyxl.readthedocs.io	A Python library to read/write Excel 2010 xlsx/xlsm files
packaging	24.1	None	Core utilities for Python packages
parso	0.8.5	https://github.com/davidhalter/parso	A Python Parser
passlib	1.7.4	https://passlib.readthedocs.io	comprehensive password hashing framework supporting over 30 schemes
PasteDeploy	3.1.0	https://docs.pylonsproject.org/projects/pastedeploy/en/latest/	Load, configure, and compose WSGI applications and servers
petl	1.7.17	https://github.com/petl-developers/petl	A Python package for extracting, transforming and loading tables of data.
pexpect	4.9.0	https://pexpect.readthedocs.io/	Pexpect allows easy control of interactive console applications.
pika	1.2.1	https://pika.readthedocs.io	Pika Python AMQP Client Library
pip	25.2	None	The PyPA recommended tool for installing Python packages.
polib	1.2.0	https://github.com/izimobil/polib/	A library to manipulate gettext files (po and mo files).
prompt_toolkit	3.0.51	None	Library for building powerful interactive command lines in Python
psycopg2	2.9.9	https://psycopg.org/	psycopg2 - Python-PostgreSQL Database Adapter
ptyprocess	0.7.0	https://github.com/pexpect/ptyprocess	Run a subprocess in a pseudo terminal
pure_eval	0.2.3	http://github.com/alexmojaki/pure_eval	Safely evaluate AST nodes without side effects
pydantic	2.11.7	None	Data validation using Python type hints
pydantic_core	2.33.2	https://github.com/pydantic/pydantic-core	Core functionality for Pydantic validation and serialization
Pygments	2.19.2	None	Pygments is a syntax highlighting package written in Python.
PyJWT	2.8.0	https://github.com/jpadilla/pyjwt	JSON Web Token implementation in Python
PyLD	2.0.4	https://github.com/digitalbazaar/pyld	Python implementation of the JSON-LD API
pyparsing	3.1.2	None	pyparsing module - Classes and methods to define and execute parsing grammars
pysolr	3.9.0	https://github.com/django-haystack/pysolr/	Lightweight Python client for Apache Solr
python-dateutil	2.9.0.post0	https://github.com/dateutil/dateutil	Extensions to the standard Python datetime module
python-magic	0.4.27	http://github.com/ahupp/python-magic	File type identification using libmagic
python-slugify	8.0.4	https://github.com/un33k/python-slugify	A Python slugify application that also handles Unicode
pytz	2024.1	http://pythonhosted.org/pytz	World timezone definitions, modern and historical
PyYAML	6.0.1	https://pyyaml.org/	YAML parser and emitter for Python
rdflib	7.1.4	None	RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
redis	5.0.7	https://github.com/redis/redis-py	Python client for Redis database and key-value store
referencing	0.36.2	None	JSON Referencing + Python
repoze.lru	0.7	http://www.repoze.org	A tiny LRU cache implementation and decorator
requests	2.32.4	https://requests.readthedocs.io	Python HTTP for Humans.
rfc3986	2.0.0	http://rfc3986.readthedocs.io	Validating URI References per RFC 3986
rich	14.1.0	https://github.com/Textualize/rich	Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal
Routes	2.5.1	https://routes.readthedocs.io/	Routing Recognition and Generation Tools
rpds-py	0.27.0	None	Python bindings to Rust's persistent data structures (rpds)
rq	1.16.2	None	RQ is a simple, lightweight, library for creating background jobs, and processing them.
s3transfer	0.13.1	https://github.com/boto/s3transfer	An Amazon S3 Transfer Manager
setuptools	59.6.0	https://github.com/pypa/setuptools	Easily download, build, install, upgrade, and uninstall Python packages
shellingham	1.5.4	https://github.com/sarugaku/shellingham	Tool to Detect Surrounding Shell
simpleeval	1.0.3	None	A simple, safe single expression evaluator library.
simplejson	3.19.2	https://github.com/simplejson/simplejson	Simple, fast, extensible JSON encoder/decoder for Python
six	1.16.0	https://github.com/benjaminp/six	Python 2 and 3 compatibility utilities
soupsieve	2.7	None	A modern CSS selector implementation for Beautiful Soup.
SQLAlchemy	1.4.52	https://www.sqlalchemy.org	Database Abstraction Library
sqlalchemy2-stubs	0.0.2a38	http://www.sqlalchemy.org	Typing Stubs for SQLAlchemy 1.4
sqlparse	0.5.0	None	A non-validating SQL parser.
stack-data	0.6.3	http://github.com/alexmojaki/stack_data	Extract data from python stack frames and tracebacks for informative displays
stringcase	1.2.0	https://github.com/okunishinishi/python-stringcase	String case converter.
tableschema	1.21.0	https://github.com/frictionlessdata/tableschema-py	A utility library for working with Table Schema in Python
tabulate	0.9.0	None	Pretty-print tabular data
tabulator	1.53.5	https://github.com/frictionlessdata/tabulator-py	Consistent interface for stream reading and writing tabular data (csv/xls/json/etc)
Tempita	0.6.0	https://github.com/TurboGears/tempita	A very small text templating language
text-unidecode	1.3	https://github.com/kmike/text-unidecode/	The most basic Text::Unidecode port
tomli	2.0.1	None	A lil' TOML parser
traitlets	5.14.3	None	Traitlets Python configuration system
typer	0.16.0	None	Typer, build great CLIs. Easy to code. Based on Python type hints.
types-python-dateutil	2.9.0.20250809	None	Typing stubs for python-dateutil
typing-inspection	0.4.1	None	Runtime typing introspection tools
typing_extensions	4.12.2	None	Backported and Experimental Type Hints for Python 3.8+
tzlocal	5.2	None	tzinfo object for the local timezone
unicodecsv	0.14.1	https://github.com/jdunck/python-unicodecsv	Python2's stdlib csv module is nice, but it doesn't support unicode. This module is a drop-in replacement which does.
Unidecode	1.0.22	UNKNOWN	ASCII transliterations of Unicode text
UNKNOWN	0.0.0	UNKNOWN	UNKNOWN
urllib3	2.2.2	None	HTTP library with thread-safe connection pooling, file post, and more.
uWSGI	2.0.30	https://uwsgi-docs.readthedocs.io/en/latest/	The uWSGI server
validators	0.35.0	None	Python Data Validation for Humans™
waitress	3.0.2	https://github.com/Pylons/waitress	Waitress WSGI server
watchdog	4.0.1	https://github.com/gorakhargosh/watchdog	Filesystem events monitoring
wcwidth	0.2.13	https://github.com/jquast/wcwidth	Measures the displayed width of unicode strings in a terminal
webassets	2.0	http://github.com/miracle2k/webassets/	Media asset management for Python, with glue code for various web frameworks
webencodings	0.5.1	https://github.com/SimonSapin/python-webencodings	Character encoding aliases for legacy web content
WebError	0.13.1	https://bitbucket.org/bbangert/weberror	Web Error handling and exception catching
WebHelpers	1.3	http://webhelpers.groovie.org/	Web Helpers
WebTest	3.0.6	https://docs.pylonsproject.org/projects/webtest/en/latest/	Helper to test WSGI applications
Werkzeug	3.0.6	None	The comprehensive WSGI web application library.
WTForms	3.1.2	None	Form validation and rendering for Python web development.
xlrd	2.0.2	http://www.python-excel.org/	Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet files
zipp	3.19.2	None	Backport of pathlib-compatible object wrapper for zip files
zope.interface	6.4.post2	https://github.com/zopefoundation/zope.interface	Interfaces for Python

Resource	Value
User CPU time	62.572 msec
System CPU time	0.000 msec
Total CPU time	62.572 msec
Elapsed time	71.920 msec
Context switches	11 voluntary, 8 involuntary

Key	Value
HTTP_ACCEPT	/
HTTP_ACCEPT_ENCODING	gzip, br, zstd, deflate
HTTP_CONNECTION	close
HTTP_HOST	ckan.cidgoh.ca
HTTP_USER_AGENT	Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
QUERY_STRING
REMOTE_ADDR	127.0.0.1
REQUEST_METHOD	GET
SCRIPT_NAME
SERVER_NAME	ckan-test4
SERVER_PORT	8080
SERVER_PROTOCOL	HTTP/1.0

Variable	Value
'_csrf_token'	'77ec88ef7721197ea0a188ae32c040e152462021'
'_fresh'	False
'_permanent'	True

Variable	Value
csrf_token	<function generate_csrf at 0x7f9be3f2b9a0>
current_user	<ckan.model.user.AnonymousUser object at 0x7f9be5302950>
g	<flask.g of 'ckan.config.middleware.flask_app'>
request	<Request 'https://ckan.cidgoh.ca/dataset/virusseq-sars-cov-2-genome-sequences/resource/bb70fa9a-dc84-4832-b95a-15071ca2fc65' [GET]>
session	<SecureCookieSession {'_csrf_token': '77ec88ef7721197ea0a188ae32c040e152462021', '_fresh': False, '_permanent': True}>

Additional Information

Versions

Installed Packages

Resource Usage

HTTP Headers

Request Vars

View information

COOKIES Variables

SESSION Variables

GET Variables

POST Variables

Config

Templates

snippets/csrf_input.html

scheming/package/resource_read.html

SQLAlchemy queries

Queries Unavailable

Install required libraries:

Configure Flask-SQLAlchemy:

Log Messages

Route List

flask.g content

Key	Value
__file__	`'/etc/ckan/default/ckan.ini'`
api_token.jwt.algorithm	`'HS256'`
api_token.jwt.decode.secret	`'string:u57eGTV3zt5_5dixXdnSJ5E_sBA'`
api_token.jwt.encode.secret	`'string:u57eGTV3zt5_5dixXdnSJ5E_sBA'`
api_token.nbytes	`32`
apitoken_header_name	`'Authorization'`
APPLICATION_ROOT	`'/'`
BABEL_DEFAULT_TIMEZONE	`'UTC'`
BABEL_DOMAIN	`'ckan;ckanext-harvest;ckanext-excelforms;ckanext-dcat'`
BABEL_TRANSLATION_DIRECTORIES	`'/home/ubuntu/ckan/lib/default/src/ckan/ckan/i18n;/home/ubuntu/ckan/lib/default/src/ckanext-harvest/ckanext/harvest/i18n;/home/ubuntu/ckanext-excelforms/ckanext/excelforms/i18n;/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/dcat/plugins/../i18n'`
ckan.activity_list_limit	`31`
ckan.activity_list_limit_max	`100`
ckan.activity_streams_email_notifications	`False`
ckan.activity_streams_enabled	`True`
ckan.auth.allow_admin_collaborators	`False`
ckan.auth.allow_collaborators_to_change_owner_org	`False`
ckan.auth.allow_dataset_collaborators	`False`
ckan.auth.anon_create_dataset	`False`
ckan.auth.create_dataset_if_not_in_organization	`True`
ckan.auth.create_default_api_keys	`False`
ckan.auth.create_unowned_dataset	`False`
ckan.auth.create_user_via_api	`False`
ckan.auth.create_user_via_web	`False`
ckan.auth.enable_cookie_auth_in_api	`True`
ckan.auth.login_view	`'user.login'`
ckan.auth.public_activity_stream_detail	`False`
ckan.auth.public_user_details	`True`
ckan.auth.reveal_private_datasets	`False`
ckan.auth.roles_that_cascade_to_sub_groups	`['admin']`
ckan.auth.route_after_login	`'dashboard.datasets'`
ckan.auth.user_create_groups	`True`
ckan.auth.user_create_organizations	`True`
ckan.auth.user_delete_groups	`True`
ckan.auth.user_delete_organizations	`True`
ckan.base_public_folder	`'public'`
ckan.base_templates_folder	`'templates'`
ckan.cache_enabled	`False`
ckan.cache_expires	`0`
ckan.cors.origin_allow_all	`False`
ckan.cors.origin_whitelist	`[]`
ckan.csrf_protection.ignore_extensions	`True`
ckan.dataset.create_on_ui_requires_resources	`True`
ckan.datasets_per_page	`20`
ckan.datastore.default_fts_index_field_types	`['text', 'tsvector']`
ckan.datastore.default_fts_index_method	`'gist'`
ckan.datastore.default_fts_lang	`'english'`
ckan.datastore.read_url	`'postgresql://datastore_default:silk0793dj@localhost/datastore_default'`
ckan.datastore.search.rows_default	`100`
ckan.datastore.search.rows_max	`32000`
ckan.datastore.sqlalchemy.pool_pre_ping	`True`
ckan.datastore.sqlsearch.allowed_functions_file	`'/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datastore/allowed_functions.txt'`
ckan.datastore.sqlsearch.enabled	`False`
ckan.datastore.write_url	`'postgresql://ckan_default:silk0793dj@localhost/datastore_default'`
ckan.datatables.data_dictionary_labels	`True`
ckan.datatables.date_format	`'llll'`
ckan.datatables.default_view	`'table'`
ckan.datatables.ellipsis_length	`100`
ckan.datatables.null_label	`''`
ckan.datatables.page_length_choices	`['20', '50', '100', '500', '1000']`
ckan.datatables.state_duration	`7200`
ckan.datatables.state_saving	`True`
ckan.debug_supress_header	`False`
ckan.default.group_type	`'group'`
ckan.default.organization_type	`'organization'`
ckan.default.package_type	`'dataset'`
ckan.default_group_sort	`'title'`
ckan.devserver.host	`'0.0.0.0'`
ckan.devserver.multiprocess	`1`
ckan.devserver.port	`5000`
ckan.devserver.ssl_cert	`''`
ckan.devserver.ssl_key	`''`
ckan.devserver.threaded	`False`
ckan.devserver.watch_patterns	`[]`
ckan.display_timezone	`'UTC'`
ckan.download_proxy	`''`
ckan.email_notifications_since	`'2 days'`
ckan.extra_resource_fields	`[]`
ckan.favicon	`'/base/images/ckan.ico'`
ckan.featured_groups	`[]`
ckan.featured_orgs	`[]`
ckan.feeds.author_link	`''`
ckan.feeds.author_name	`''`
ckan.feeds.authority_name	`''`
ckan.feeds.date	`''`
ckan.feeds.limit	`20`
ckan.gravatar_default	`'identicon'`
ckan.group_and_organization_list_all_fields_max	`25`
ckan.group_and_organization_list_max	`1000`
ckan.harvest.mq.db	`'1'`
ckan.harvest.mq.hostname	`'127.0.0.1'`
ckan.harvest.mq.port	`'6379'`
ckan.harvest.mq.queue.fetch	`'ckan.harvest.fetch'`
ckan.harvest.mq.queue.gather	`'ckan.harvest.gather'`
ckan.harvest.mq.redis_db	`'0'`
ckan.harvest.mq.type	`'redis'`
ckan.hide_activity_from_users	`['default']`
ckan.hide_version	`False`
ckan.i18n.extra_directory	`''`
ckan.i18n.extra_gettext_domain	`''`
ckan.i18n.extra_locales	`[]`
ckan.i18n.rtl_languages	`['he', 'ar', 'fa_IR']`
ckan.i18n.rtl_theme	`'css/main-rtl'`
ckan.i18n_directory	`''`
ckan.jobs.timeout	`180`
ckan.legacy_route_mappings	`'{}'`
ckan.locale_default	`'en'`
ckan.locale_order	`[]`
ckan.locales_filtered_out	`[]`
ckan.locales_offered	`[]`
ckan.max_image_size	`2`
ckan.max_resource_size	`10`
ckan.mimetype_guess	`'file_ext'`
ckan.plugins	`['theme_dj', 'dcat', 'dcat_rdf_harvester', 'structured_data', 'dcat_json_harvester', 'validation', 'scheming_datasets', 'scheming_groups', 'scheming_organizations', 'excelforms', 'tabledesigner', 'datastore', 'activity', 'xloader', 'datatables_view', 'image_view', 'harvest', 'ckan_harvester']`
ckan.preview.image_formats	`'png jpeg jpg gif'`
ckan.recaptcha.privatekey	`''`
ckan.recaptcha.publickey	`''`
ckan.redis.url	`'redis://localhost:6379/0'`
ckan.requests.timeout	`5`
ckan.resource_formats	`'/home/ubuntu/ckan/lib/default/src/ckan/ckan/config/resource_formats.json'`
ckan.root_path	`''`
ckan.search.default_include_private	`True`
ckan.search.default_package_sort	`'score desc, metadata_modified desc'`
ckan.search.remove_deleted_packages	`True`
ckan.search.rows_max	`1000`
ckan.search.show_all_types	`'dataset'`
ckan.search.solr_allowed_query_parsers	`[]`
ckan.search.solr_commit	`True`
ckan.site_about	`''`
ckan.site_custom_css	`''`
ckan.site_description	`''`
ckan.site_id	`'default'`
ckan.site_intro_text	`''`
ckan.site_logo	`'/base/images/ckan-logo.png'`
ckan.site_title	`'CKAN'`
ckan.site_url	`'https://ckan.cidgoh.ca'`
ckan.static_max_age	`3600`
ckan.storage_path	`'/var/lib/ckan/default'`
ckan.template_title_delimiter	`'-'`
ckan.theme	`'css/main'`
ckan.upload.group.mimetypes	`['image/png', 'image/gif', 'image/jpeg']`
ckan.upload.group.types	`['image']`
ckan.upload.user.mimetypes	`['image/png', 'image/gif', 'image/jpeg']`
ckan.upload.user.types	`['image']`
ckan.user.last_active_interval	`600`
ckan.user_list_limit	`20`
ckan.user_reset_landing_page	`'home.index'`
ckan.valid_url_schemes	`['http', 'https', 'ftp']`
ckan.views.default_views	`['image_view', 'datatables_view']`
ckan.webassets.path	`''`
ckan.webassets.url	`'/webassets'`
ckan.webassets.use_x_sendfile	`False`
ckanext.dcat.base_uri	`None`
ckanext.dcat.catalog_endpoint	`'/catalog.{_format}'`
ckanext.dcat.clean_tags	`False`
ckanext.dcat.compatibility_mode	`False`
ckanext.dcat.datasets_per_page	`100`
ckanext.dcat.enable_content_negotiation	`False`
ckanext.dcat.enable_rdf_endpoints	`True`
ckanext.dcat.expose_subcatalogs	`False`
ckanext.dcat.json_endpoint	`'/dcat.json'`
ckanext.dcat.max_file_size	`50`
ckanext.dcat.normalize_ckan_format	`True`
ckanext.dcat.output_spatial_format	`['wkt']`
ckanext.dcat.rdf.profiles	`'euro_dcat_ap_3'`
ckanext.dcat.resource.inherit.license	`False`
ckanext.dcat.structured_data.profiles	`['schemaorg']`
ckanext.dcat.translate_keys	`True`
ckanext.xloader.api_token	`'eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJqdGkiOiIxT1VubkEyRVVhbndTZDdHTU84R3g1VmZDZDM4d0tMNGpfSmtMQ0htT09NIiwiaWF0IjoxNzU0MTAzOTM2fQ.TeeqhepiH2ic5t1kw8AWuATk9DPX832vROxeR7Ex5wc'`
ckanext.xloader.clean_datastore_tables	`False`
ckanext.xloader.debug_badges	`False`
ckanext.xloader.formats	`None`
ckanext.xloader.ignore_hash	`False`
ckanext.xloader.job_timeout	`3600`
ckanext.xloader.jobs_db.uri	`'postgresql://ckan_default:silk0793dj@localhost/ckan_default'`
ckanext.xloader.max_content_length	`1000000000`
ckanext.xloader.max_excerpt_lines	`0`
ckanext.xloader.max_type_guessing_length	`0`
ckanext.xloader.parse_dates_dayfirst	`False`
ckanext.xloader.parse_dates_yearfirst	`False`
ckanext.xloader.show_badges	`True`
ckanext.xloader.site_url	`None`
ckanext.xloader.site_url_ignore_path_regex	`None`
ckanext.xloader.ssl_verify	`True`
ckanext.xloader.strict_type_guessing	`True`
ckanext.xloader.use_type_guessing	`False`
ckanext.xloader.validation.enforce_schema	`True`
ckanext.xloader.validation.requires_successful_report	`False`
clear_logo_upload	`''`
computed_template_paths	['/home/ubuntu/ckan/lib/default/src/ckanext-theme-dj/ckanext/theme_dj/templates', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/dcat/plugins/../templates/dcat', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/dcat/plugins/../templates/structured_data', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/validation/templates', '/home/ubuntu/ckan/lib/default/src/ckanext-scheming/ckanext/scheming/templates', '/home/ubuntu/ckanext-excelforms/ckanext/excelforms/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/tabledesigner/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datastore/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/activity/templates', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/xloader/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datatablesview/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/imageview/theme/templates', '/home/ubuntu/ckan/lib/default/src/ckanext-harvest/ckanext/harvest/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckan/templates']
config.mode	`'strict'`
DEBUG	`True`
debug	`True`
DEBUG_TB_ENABLED	`True`
DEBUG_TB_HOSTS	`()`
DEBUG_TB_INTERCEPT_REDIRECTS	`False`
DEBUG_TB_PANELS	('flask_debugtoolbar.panels.versions.VersionDebugPanel', 'flask_debugtoolbar.panels.timer.TimerDebugPanel', 'flask_debugtoolbar.panels.headers.HeaderDebugPanel', 'flask_debugtoolbar.panels.request_vars.RequestVarsDebugPanel', 'flask_debugtoolbar.panels.config_vars.ConfigVarsDebugPanel', 'flask_debugtoolbar.panels.template.TemplateDebugPanel', 'flask_debugtoolbar.panels.sqlalchemy.SQLAlchemyDebugPanel', 'flask_debugtoolbar.panels.logger.LoggingPanel', 'flask_debugtoolbar.panels.route_list.RouteListDebugPanel', 'flask_debugtoolbar.panels.profiler.ProfilerDebugPanel', 'flask_debugtoolbar.panels.g.GDebugPanel')
DEBUG_TB_ROUTES_HOST	`None`
email_to	`''`
error_email_from	`''`
EXPLAIN_TEMPLATE_LOADING	`False`
extra_public_paths	`''`
extra_template_paths	`''`
here	`'/etc/ckan/default'`
licenses_group_url	`''`
logo_upload	`''`
MAX_CONTENT_LENGTH	`None`
MAX_COOKIE_SIZE	`4093`
package_edit_return_url	`''`
package_hide_extras	`[]`
package_new_return_url	`''`
PERMANENT_SESSION_LIFETIME	`31536000`
plugin_public_paths	`['/home/ubuntu/ckan/lib/default/src/ckanext-theme-dj/ckanext/theme_dj/public', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/activity/public', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datatablesview/public', '/home/ubuntu/ckan/lib/default/src/ckanext-harvest/ckanext/harvest/public']`
plugin_template_paths	['/home/ubuntu/ckan/lib/default/src/ckanext-theme-dj/ckanext/theme_dj/templates', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/dcat/plugins/../templates/dcat', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/dcat/plugins/../templates/structured_data', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/validation/templates', '/home/ubuntu/ckan/lib/default/src/ckanext-scheming/ckanext/scheming/templates', '/home/ubuntu/ckanext-excelforms/ckanext/excelforms/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/tabledesigner/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datastore/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/activity/templates', '/home/ubuntu/ckan/lib/default/lib/python3.10/site-packages/ckanext/xloader/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/datatablesview/templates', '/home/ubuntu/ckan/lib/default/src/ckan/ckanext/imageview/theme/templates', '/home/ubuntu/ckan/lib/default/src/ckanext-harvest/ckanext/harvest/templates']
PREFERRED_URL_SCHEME	`'http'`
processes	`'1'`
PROPAGATE_EXCEPTIONS	`None`
REMEMBER_COOKIE_DOMAIN	`None`
REMEMBER_COOKIE_DURATION	`31536000`
REMEMBER_COOKIE_HTTPONLY	`True`
REMEMBER_COOKIE_NAME	`'remember_token'`
REMEMBER_COOKIE_PATH	`'/'`
REMEMBER_COOKIE_REFRESH_EACH_REQUEST	`False`
REMEMBER_COOKIE_SAMESITE	`'None'`
REMEMBER_COOKIE_SECURE	`False`
scheming.dataset_schemas	`'ckanext.scheming:metadata_portal.json\nckanext.scheming:schemas/dataset.json'`
search.facets	`['organization', 'groups', 'tags', 'res_format', 'license_id']`
search.facets.default	`10`
search.facets.limit	`50`
SECRET_KEY	`'u57eGTV3zt5_5dixXdnSJ5E_sBA'`
SEND_FILE_MAX_AGE_DEFAULT	`None`
SERVER_NAME	`None`
SESSION_COOKIE_DOMAIN	`''`
SESSION_COOKIE_HTTPONLY	`True`
SESSION_COOKIE_NAME	`'ckan'`
SESSION_COOKIE_PATH	`''`
SESSION_COOKIE_SAMESITE	`'Lax'`
SESSION_COOKIE_SECURE	`False`
SESSION_KEY_PREFIX	`'session:'`
SESSION_PERMANENT	`True`
SESSION_REFRESH_EACH_REQUEST	`False`
SESSION_TYPE	`'cookie'`
SESSION_USE_SIGNER	`False`
smtp.mail_from	`''`
smtp.password	`''`
smtp.reply_to	`''`
smtp.server	`'localhost'`
smtp.starttls	`False`
smtp.user	`''`
solr_password	`''`
solr_timeout	`60`
solr_url	`'http://127.0.0.1:8983/solr/ckan'`
solr_user	`''`
sqlalchemy.pool_pre_ping	`True`
sqlalchemy.url	`'postgresql://ckan_default:silk0793dj@localhost/ckan_default'`
SQLALCHEMY_RECORD_QUERIES	`True`
TEMPLATES_AUTO_RELOAD	`None`
TESTING	`False`
testing	`False`
TRAP_BAD_REQUEST_ERRORS	`None`
TRAP_HTTP_EXCEPTIONS	`False`
use	`'egg:ckan'`
USE_X_SENDFILE	`False`
WTF_CSRF_CHECK_DEFAULT	`True`
WTF_CSRF_ENABLED	`True`
WTF_CSRF_FIELD_NAME	`'_csrf_token'`
WTF_CSRF_HEADERS	`['X-CSRFToken', 'X-CSRF-Token']`
WTF_CSRF_METHODS	`{'PATCH', 'PUT', 'DELETE', 'POST'}`
WTF_CSRF_SECRET_KEY	`'string:u57eGTV3zt5_5dixXdnSJ5E_sBA'`
WTF_CSRF_SSL_STRICT	`True`
WTF_CSRF_TIME_LIMIT	`31536000`
WTF_I18N_ENABLED	`True`

Variable	Value
csrf_token	<function generate_csrf at 0x7f9be3f2b9a0>
current_resource_view	None
current_user	<ckan.model.user.AnonymousUser object at 0x7f9be5302950>
dataset_type	'dataset'
g	<flask.g of 'ckan.config.middleware.flask_app'>
package	{'author': '', 'author_email': '', 'creator_user_id': '22a99e46-9eae-460a-9fbc-db3902214edc', 'id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'isopen': True, 'license_id': 'cc-by', 'license_title': 'Creative Commons Attribution', 'license_url': 'http://www.opendefinition.org/licenses/cc-by', 'maintainer': '', 'maintainer_email': '', 'metadata_created': '2025-08-23T04:01:03.987710', 'metadata_modified': '2025-08-23T04:02:36.369140', 'name': 'virusseq-sars-cov-2-genome-sequences', 'notes': "The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.\r\n\r\nAs SARS-CoV-2—the causative agent of COVID-19—spreads between individuals, the virus continues to mutate. Tracking these changes is possible through genome sequencing of the virus. This data contains the unaligned reads in .fasta format for all available Cancogen samples.\r\n\r\nThe `last_updated` column will change under these circumstances: 1) When a sample first has its lineage assigned; 2) When pangolin or its data versions are updated; 3) When a sample's data fasta file is updated. If pangolin data is updated and the lineage assigned remains the same, this column will still change.", 'num_resources': 1, 'num_tags': 3, 'organization': {'id': 'ecb65bab-51ed-4838-b374-939247dae79f', 'name': 'cidgoh', 'title': 'CIDGOH', 'type': 'organization', 'description': '', 'image_url': '', 'created': '2025-08-02T03:06:42.785354', 'is_organization': True, 'approval_status': 'approved', 'state': 'active'}, 'owner_org': 'ecb65bab-51ed-4838-b374-939247dae79f', 'private': False, 'state': 'active', 'title': 'VirusSeq SARS-CoV-2 Genome Sequences', 'type': 'dataset', 'url': '', 'version': '', 'resources': [{'cache_last_updated': None, 'cache_url': None, 'created': '2025-08-23T04:01:55.866618', 'datastore_active': False, 'datastore_contains_all_records_of_source_file': False, 'description': 'The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.', 'format': '', 'hash': '', 'id': 'bb70fa9a-dc84-4832-b95a-15071ca2fc65', 'last_modified': None, 'metadata_modified': '2025-08-23T04:01:56.999557', 'mimetype': None, 'mimetype_inner': None, 'name': 'VirusSeq SARS-CoV-2 Genome Sequences', 'package_id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'position': 0, 'resource_type': None, 'size': None, 'state': 'active', 'url': 'https://genomecanada.ca/challenge-areas/cancogen/virusseq', 'url_type': '', 'has_views': False}], 'tags': [{'display_name': 'cancogen', 'id': '3aeddf1e-2486-4e19-bfa9-f0dcc7fbac40', 'name': 'cancogen', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'covid19', 'id': 'e750ab57-c92b-4bc0-b826-7fda43c6553c', 'name': 'covid19', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'virusseq', 'id': '7b1a97a8-d161-468e-a1f0-986864590bc3', 'name': 'virusseq', 'state': 'active', 'vocabulary_id': None}], 'extras': [], 'groups': [], 'relationships_as_subject': [], 'relationships_as_object': []}
pkg	<Package id=515e0188-31d0-4459-bcbf-cde2024b62b1 name=virusseq-sars-cov-2-genome-sequences title=VirusSeq SARS-CoV-2 Genome Sequences version= url= author= author_email= maintainer= maintainer_email= notes=The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines. As SARS-CoV-2—the causative agent of COVID-19—spreads between individuals, the virus continues to mutate. Tracking these changes is possible through genome sequencing of the virus. This data contains the unaligned reads in .fasta format for all available Cancogen samples. The `last_updated` column will change under these circumstances: 1) When a sample first has its lineage assigned; 2) When pangolin or its data versions are updated; 3) When a sample's data fasta file is updated. If pangolin data is updated and the lineage assigned remains the same, this column will still change. license_id=cc-by type=dataset owner_org=ecb65bab-51ed-4838-b374-939247dae79f creator_user_id=22a99e46-9eae-460a-9fbc-db3902214edc metadata_created=2025-08-23 04:01:03.987710 metadata_modified=2025-08-23 04:02:36.369140 private=False state=active plugin_data=None>
pkg_dict	{'author': '', 'author_email': '', 'creator_user_id': '22a99e46-9eae-460a-9fbc-db3902214edc', 'id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'isopen': True, 'license_id': 'cc-by', 'license_title': 'Creative Commons Attribution', 'license_url': 'http://www.opendefinition.org/licenses/cc-by', 'maintainer': '', 'maintainer_email': '', 'metadata_created': '2025-08-23T04:01:03.987710', 'metadata_modified': '2025-08-23T04:02:36.369140', 'name': 'virusseq-sars-cov-2-genome-sequences', 'notes': "The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.\r\n\r\nAs SARS-CoV-2—the causative agent of COVID-19—spreads between individuals, the virus continues to mutate. Tracking these changes is possible through genome sequencing of the virus. This data contains the unaligned reads in .fasta format for all available Cancogen samples.\r\n\r\nThe `last_updated` column will change under these circumstances: 1) When a sample first has its lineage assigned; 2) When pangolin or its data versions are updated; 3) When a sample's data fasta file is updated. If pangolin data is updated and the lineage assigned remains the same, this column will still change.", 'num_resources': 1, 'num_tags': 3, 'organization': {'id': 'ecb65bab-51ed-4838-b374-939247dae79f', 'name': 'cidgoh', 'title': 'CIDGOH', 'type': 'organization', 'description': '', 'image_url': '', 'created': '2025-08-02T03:06:42.785354', 'is_organization': True, 'approval_status': 'approved', 'state': 'active'}, 'owner_org': 'ecb65bab-51ed-4838-b374-939247dae79f', 'private': False, 'state': 'active', 'title': 'VirusSeq SARS-CoV-2 Genome Sequences', 'type': 'dataset', 'url': '', 'version': '', 'resources': [{'cache_last_updated': None, 'cache_url': None, 'created': '2025-08-23T04:01:55.866618', 'datastore_active': False, 'datastore_contains_all_records_of_source_file': False, 'description': 'The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.', 'format': '', 'hash': '', 'id': 'bb70fa9a-dc84-4832-b95a-15071ca2fc65', 'last_modified': None, 'metadata_modified': '2025-08-23T04:01:56.999557', 'mimetype': None, 'mimetype_inner': None, 'name': 'VirusSeq SARS-CoV-2 Genome Sequences', 'package_id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'position': 0, 'resource_type': None, 'size': None, 'state': 'active', 'url': 'https://genomecanada.ca/challenge-areas/cancogen/virusseq', 'url_type': '', 'has_views': False}], 'tags': [{'display_name': 'cancogen', 'id': '3aeddf1e-2486-4e19-bfa9-f0dcc7fbac40', 'name': 'cancogen', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'covid19', 'id': 'e750ab57-c92b-4bc0-b826-7fda43c6553c', 'name': 'covid19', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'virusseq', 'id': '7b1a97a8-d161-468e-a1f0-986864590bc3', 'name': 'virusseq', 'state': 'active', 'vocabulary_id': None}], 'extras': [], 'groups': [], 'relationships_as_subject': [], 'relationships_as_object': []}
request	<Request 'https://ckan.cidgoh.ca/dataset/virusseq-sars-cov-2-genome-sequences/resource/bb70fa9a-dc84-4832-b95a-15071ca2fc65' [GET]>
resource	{'cache_last_updated': None, 'cache_url': None, 'created': '2025-08-23T04:01:55.866618', 'datastore_active': False, 'datastore_contains_all_records_of_source_file': False, 'description': 'The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.', 'format': '', 'hash': '', 'id': 'bb70fa9a-dc84-4832-b95a-15071ca2fc65', 'last_modified': None, 'metadata_modified': '2025-08-23T04:01:56.999557', 'mimetype': None, 'mimetype_inner': None, 'name': 'VirusSeq SARS-CoV-2 Genome Sequences', 'package_id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'position': 0, 'resource_type': None, 'size': None, 'state': 'active', 'url': 'https://genomecanada.ca/challenge-areas/cancogen/virusseq', 'url_type': '', 'has_views': False}
resource_views	[]
session	<SecureCookieSession {'_csrf_token': '77ec88ef7721197ea0a188ae32c040e152462021', '_fresh': False, '_permanent': True}>

URL route	Endpoint name	HTTP methods	Is alias	Redirect to
/	home.index	GET, HEAD, OPTIONS	False	None
/<path:filename>	static	GET, HEAD, OPTIONS	False	None
/about	home.about	GET, HEAD, OPTIONS	False	None
/api/	api.get_api	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/i18n/<lang>	api.i18n_js_translations	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/dataset/autocomplete	api.dataset_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/group/autocomplete	api.group_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/organization/autocomplete	api.organization_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/resource/format_autocomplete	api.format_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/snippet/<snippet_path>	api.snippet	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/tag/autocomplete	api.tag_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=2):ver>/util/user/autocomplete	api.user_autocomplete	GET, HEAD, OPTIONS	False	None
/api/<int(min=1, max=3):ver>	api.get_api	GET, HEAD, OPTIONS	False	None
/api/<int(min=3, max=3):ver>/action/<logic_function>	api.action	GET, HEAD, OPTIONS, POST	False	None
/api/action/<logic_function>	api.action	GET, HEAD, OPTIONS, POST	False	None
/api/i18n/<lang>	api.i18n_js_translations	GET, HEAD, OPTIONS	False	None
/api/util/dataset/autocomplete	api.dataset_autocomplete	GET, HEAD, OPTIONS	False	None
/api/util/group/autocomplete	api.group_autocomplete	GET, HEAD, OPTIONS	False	None
/api/util/organization/autocomplete	api.organization_autocomplete	GET, HEAD, OPTIONS	False	None
/api/util/resource/format_autocomplete	api.format_autocomplete	GET, HEAD, OPTIONS	False	None
/api/util/snippet/<snippet_path>	api.snippet	GET, HEAD, OPTIONS	False	None
/api/util/tag/autocomplete	api.tag_autocomplete	GET, HEAD, OPTIONS	False	None
/api/util/user/autocomplete	api.user_autocomplete	GET, HEAD, OPTIONS	False	None
/catalog.<_format>	dcat.read_catalog	GET, HEAD, OPTIONS	False	None
/ckan-admin/	admin.index	GET, HEAD, OPTIONS	False	None
/ckan-admin/config	admin.config	GET, HEAD, OPTIONS, POST	False	None
/ckan-admin/reset_config	admin.reset_config	GET, HEAD, OPTIONS, POST	False	None
/ckan-admin/trash	admin.trash	GET, HEAD, OPTIONS, POST	False	None
/dashboard/	activity.dashboard	GET, HEAD, OPTIONS	False	None
/dashboard/datasets	dashboard.datasets	GET, HEAD, OPTIONS	False	None
/dashboard/groups	dashboard.groups	GET, HEAD, OPTIONS	False	None
/dashboard/organizations	dashboard.organizations	GET, HEAD, OPTIONS	False	None
/dataset/	dataset.search	GET, HEAD, OPTIONS	False	None
/dataset/<_id>.<_format>	dcat.read_dataset	GET, HEAD, OPTIONS	False	None
/dataset/<id>	dataset.read	GET, HEAD, OPTIONS	False	None
/dataset/<id>/delete-datastore/<resource_id>	xloader.delete_datastore_table	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/dictionary/<resource_id>	tabledesigner.tabledesigner	OPTIONS, POST	False	None
/dataset/<id>/dictionary/<resource_id>	datastore.dictionary	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/excelforms/<resource_id>/upload	excelforms.upload	OPTIONS, POST	False	None
/dataset/<id>/excelforms/template-<resource_id>.xlsx	excelforms.template	GET, HEAD, OPTIONS	False	None
/dataset/<id>/history/<activity_id>	activity.package_history	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>	dataset_resource.read	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>	resource.read	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/delete	dataset_resource.delete	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/delete	resource.delete	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/download	dataset_resource.download	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/download	resource.download	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/download/<filename>	dataset_resource.download	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/download/<filename>	resource.download	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/edit	dataset_resource.edit	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/edit	resource.edit	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/edit_view/<view_id>	dataset_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/edit_view/<view_id>	resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/new_view	dataset_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/new_view	resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/<resource_id>/validation	validation.read	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/view	dataset_resource.view	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/view	resource.view	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/view/<view_id>	dataset_resource.view	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/view/<view_id>	resource.view	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/views	dataset_resource.views	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/<resource_id>/views	resource.views	GET, HEAD, OPTIONS	False	None
/dataset/<id>/resource/new	dataset_resource.new	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource/new	resource.new	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resource_data/<resource_id>	xloader.resource_data	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/resources/<resource_id>/history/<activity_id>	activity.resource_history	GET, HEAD, OPTIONS	False	None
/dataset/<id>/tabledesigner/<resource_id>/add-row	tabledesigner.add_row	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/tabledesigner/<resource_id>/delete-rows	tabledesigner.delete_rows	GET, HEAD, OPTIONS, POST	False	None
/dataset/<id>/tabledesigner/<resource_id>/edit-row	tabledesigner.edit_row	GET, HEAD, OPTIONS, POST	False	None
/dataset/activity/<id>	activity.package_activity	GET, HEAD, OPTIONS	False	None
/dataset/changes/<id>	activity.package_changes	GET, HEAD, OPTIONS	False	None
/dataset/changes_multiple	activity.package_changes_multiple	GET, HEAD, OPTIONS	False	None
/dataset/delete/<id>	dataset.delete	GET, HEAD, OPTIONS, POST	False	None
/dataset/edit/<id>	dataset.edit	GET, HEAD, OPTIONS, POST	False	None
/dataset/follow/<id>	dataset.follow	OPTIONS, POST	False	None
/dataset/followers/<id>	dataset.followers	GET, HEAD, OPTIONS	False	None
/dataset/groups/<id>	dataset.groups	GET, HEAD, OPTIONS, POST	False	None
/dataset/harvest_object/<id>	harvester.object_show	GET, HEAD, OPTIONS	False	None
/dataset/new	dataset.new	GET, HEAD, OPTIONS, POST	False	None
/dataset/resources/<id>	dataset.resources	GET, HEAD, OPTIONS	False	None
/dataset/unfollow/<id>	dataset.unfollow	OPTIONS, POST	False	None
/dataset_series/<_id>.<_format>	dcat.read_dataset	GET, HEAD, OPTIONS	False	None
/datastore/dump/<resource_id>	datastore.dump	GET, HEAD, OPTIONS	False	None
/datatables/ajax/<resource_view_id>	datatablesview.ajax	OPTIONS, POST	False	None
/datatables/filtered-download/<resource_view_id>	datatablesview.filtered_download	OPTIONS, POST	False	None
/feeds/custom.atom	feeds.custom	GET, HEAD, OPTIONS	False	None
/feeds/dataset.atom	feeds.general	GET, HEAD, OPTIONS	False	None
/feeds/group/<string:id>.atom	feeds.group	GET, HEAD, OPTIONS	False	None
/feeds/organization/<string:id>.atom	feeds.organization	GET, HEAD, OPTIONS	False	None
/feeds/tag/<string:id>.atom	feeds.tag	GET, HEAD, OPTIONS	False	None
/group/	group.index	GET, HEAD, OPTIONS	False	None
/group/<id>	group.read	GET, HEAD, OPTIONS	False	None
/group/about/<id>	group.about	GET, HEAD, OPTIONS	False	None
/group/activity/<id>	activity.group_activity	GET, HEAD, OPTIONS	False	None
/group/admins/<id>	group.admins	GET, HEAD, OPTIONS, POST	False	None
/group/bulk_process/<id>	group.bulk_process	GET, HEAD, OPTIONS, POST	False	None
/group/changes/<id>	activity.group_changes	GET, HEAD, OPTIONS	False	None
/group/changes_multiple	activity.group_changes_multiple	GET, HEAD, OPTIONS	False	None
/group/delete/<id>	group.delete	GET, HEAD, OPTIONS, POST	False	None
/group/edit/<id>	group.edit	GET, HEAD, OPTIONS, POST	False	None
/group/follow/<id>	group.follow	OPTIONS, POST	False	None
/group/followers/<id>	group.followers	GET, HEAD, OPTIONS, POST	False	None
/group/manage_members/<id>	group.manage_members	GET, HEAD, OPTIONS, POST	False	None
/group/member_delete/<id>	group.member_delete	GET, HEAD, OPTIONS, POST	False	None
/group/member_dump/<id>	group.member_dump	GET, HEAD, OPTIONS	False	None
/group/member_new/<id>	group.member_new	GET, HEAD, OPTIONS, POST	False	None
/group/members/<id>	group.members	GET, HEAD, OPTIONS	False	None
/group/new	group.new	GET, HEAD, OPTIONS, POST	False	None
/group/unfollow/<id>	group.unfollow	OPTIONS, POST	False	None
/harvest/	harvest.search	GET, HEAD, OPTIONS	False	None
/harvest/<id>	harvest.read	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>	harvest_resource.read	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>/delete	harvest_resource.delete	GET, HEAD, OPTIONS, POST	False	None
/harvest/<id>/resource/<resource_id>/download	harvest_resource.download	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>/download/<filename>	harvest_resource.download	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>/edit	harvest_resource.edit	GET, HEAD, OPTIONS, POST	False	None
/harvest/<id>/resource/<resource_id>/edit_view/<view_id>	harvest_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/harvest/<id>/resource/<resource_id>/new_view	harvest_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/harvest/<id>/resource/<resource_id>/view	harvest_resource.view	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>/view/<view_id>	harvest_resource.view	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/<resource_id>/views	harvest_resource.views	GET, HEAD, OPTIONS	False	None
/harvest/<id>/resource/new	harvest_resource.new	GET, HEAD, OPTIONS, POST	False	None
/harvest/<source>/job	harvester.job_list	GET, HEAD, OPTIONS	False	None
/harvest/<source>/job/<id>	harvester.job_show	GET, HEAD, OPTIONS	False	None
/harvest/<source>/job/<id>/abort	harvester.job_abort	GET, HEAD, OPTIONS	False	None
/harvest/<source>/job/last	harvester.job_show_last	GET, HEAD, OPTIONS	False	None
/harvest/about/<id>	harvester.about	GET, HEAD, OPTIONS	False	None
/harvest/admin/<id>	harvester.admin	GET, HEAD, OPTIONS	False	None
/harvest/clear/<id>	harvester.clear	GET, HEAD, OPTIONS, POST	False	None
/harvest/delete/<id>	harvester.delete	GET, HEAD, OPTIONS	False	None
/harvest/delete/<id>	harvest.delete	GET, HEAD, OPTIONS, POST	False	None
/harvest/edit/<id>	harvest.edit	GET, HEAD, OPTIONS, POST	False	None
/harvest/follow/<id>	harvest.follow	OPTIONS, POST	False	None
/harvest/followers/<id>	harvest.followers	GET, HEAD, OPTIONS	False	None
/harvest/groups/<id>	harvest.groups	GET, HEAD, OPTIONS, POST	False	None
/harvest/new	harvest.new	GET, HEAD, OPTIONS, POST	False	None
/harvest/object/<id>	harvester.object_show	GET, HEAD, OPTIONS	False	None
/harvest/refresh/<id>	harvester.refresh	GET, HEAD, OPTIONS, POST	False	None
/harvest/resources/<id>	harvest.resources	GET, HEAD, OPTIONS	False	None
/harvest/unfollow/<id>	harvest.unfollow	OPTIONS, POST	False	None
/metadata/	metadata.search	GET, HEAD, OPTIONS	False	None
/metadata/<id>	metadata.read	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>	metadata_resource.read	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>/delete	metadata_resource.delete	GET, HEAD, OPTIONS, POST	False	None
/metadata/<id>/resource/<resource_id>/download	metadata_resource.download	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>/download/<filename>	metadata_resource.download	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>/edit	metadata_resource.edit	GET, HEAD, OPTIONS, POST	False	None
/metadata/<id>/resource/<resource_id>/edit_view/<view_id>	metadata_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/metadata/<id>/resource/<resource_id>/new_view	metadata_resource.edit_view	GET, HEAD, OPTIONS, POST	False	None
/metadata/<id>/resource/<resource_id>/view	metadata_resource.view	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>/view/<view_id>	metadata_resource.view	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/<resource_id>/views	metadata_resource.views	GET, HEAD, OPTIONS	False	None
/metadata/<id>/resource/new	metadata_resource.new	GET, HEAD, OPTIONS, POST	False	None
/metadata/delete/<id>	metadata.delete	GET, HEAD, OPTIONS, POST	False	None
/metadata/edit/<id>	metadata.edit	GET, HEAD, OPTIONS, POST	False	None
/metadata/follow/<id>	metadata.follow	OPTIONS, POST	False	None
/metadata/followers/<id>	metadata.followers	GET, HEAD, OPTIONS	False	None
/metadata/groups/<id>	metadata.groups	GET, HEAD, OPTIONS, POST	False	None
/metadata/new	metadata.new	GET, HEAD, OPTIONS, POST	False	None
/metadata/resources/<id>	metadata.resources	GET, HEAD, OPTIONS	False	None
/metadata/unfollow/<id>	metadata.unfollow	OPTIONS, POST	False	None
/no/	home.redirect_locale	GET, HEAD, OPTIONS	False	None
/no/<path:path>	home.redirect_locale	GET, HEAD, OPTIONS	False	None
/organization/	organization.index	GET, HEAD, OPTIONS	False	None
/organization/<id>	organization.read	GET, HEAD, OPTIONS	False	None
/organization/about/<id>	organization.about	GET, HEAD, OPTIONS	False	None
/organization/activity/<id>	activity.organization_activity	GET, HEAD, OPTIONS	False	None
/organization/admins/<id>	organization.admins	GET, HEAD, OPTIONS, POST	False	None
/organization/bulk_process/<id>	organization.bulk_process	GET, HEAD, OPTIONS, POST	False	None
/organization/changes/<id>	activity.organization_changes	GET, HEAD, OPTIONS	False	None
/organization/changes_multiple	activity.organization_changes_multiple	GET, HEAD, OPTIONS	False	None
/organization/delete/<id>	organization.delete	GET, HEAD, OPTIONS, POST	False	None
/organization/edit/<id>	organization.edit	GET, HEAD, OPTIONS, POST	False	None
/organization/follow/<id>	organization.follow	OPTIONS, POST	False	None
/organization/followers/<id>	organization.followers	GET, HEAD, OPTIONS, POST	False	None
/organization/manage_members/<id>	organization.manage_members	GET, HEAD, OPTIONS, POST	False	None
/organization/member_delete/<id>	organization.member_delete	GET, HEAD, OPTIONS, POST	False	None
/organization/member_dump/<id>	organization.member_dump	GET, HEAD, OPTIONS	False	None
/organization/member_new/<id>	organization.member_new	GET, HEAD, OPTIONS, POST	False	None
/organization/members/<id>	organization.members	GET, HEAD, OPTIONS	False	None
/organization/new	organization.new	GET, HEAD, OPTIONS, POST	False	None
/organization/unfollow/<id>	organization.unfollow	OPTIONS, POST	False	None
/robots.txt	home.robots_txt	GET, HEAD, OPTIONS	False	None
/testing/primer	util.primer	GET, HEAD, OPTIONS	False	None
/user/	user.index	GET, HEAD, OPTIONS	False	None
/user/<id>	user.read	GET, HEAD, OPTIONS	False	None
/user/<id>/api-tokens	user.api_tokens	GET, HEAD, OPTIONS, POST	False	None
/user/<id>/api-tokens/<jti>/revoke	user.api_token_revoke	OPTIONS, POST	False	None
/user/<id>/groups	user.read_groups	GET, HEAD, OPTIONS	False	None
/user/<id>/organizations	user.read_organizations	GET, HEAD, OPTIONS	False	None
/user/_logout	user.logout	GET, HEAD, OPTIONS, POST	False	None
/user/activity/<id>	activity.user_activity	GET, HEAD, OPTIONS	False	None
/user/delete/<id>	user.delete	GET, HEAD, OPTIONS, POST	False	None
/user/edit	user.edit	GET, HEAD, OPTIONS, POST	False	None
/user/edit/<id>	user.edit	GET, HEAD, OPTIONS, POST	False	None
/user/follow/<id>	user.follow	OPTIONS, POST	False	None
/user/followers/<id>	user.followers	GET, HEAD, OPTIONS	False	None
/user/logged_out_redirect	user.logged_out_page	GET, HEAD, OPTIONS	False	None
/user/login	user.login	GET, HEAD, OPTIONS, POST	False	None
/user/me	user.me	GET, HEAD, OPTIONS	False	None
/user/register	user.register	GET, HEAD, OPTIONS, POST	False	None
/user/reset	user.request_reset	GET, HEAD, OPTIONS, POST	False	None
/user/reset/<id>	user.perform_reset	GET, HEAD, OPTIONS, POST	False	None
/user/sysadmin	user.sysadmin	OPTIONS, POST	False	None
/user/unfollow/<id>	user.unfollow	OPTIONS, POST	False	None
/util/redirect	util.internal_redirect	GET, HEAD, OPTIONS, POST	False	None
/webassets/<path:path>	webassets.index	GET, HEAD, OPTIONS	False	None
/zh_CN/	home.redirect_locale	GET, HEAD, OPTIONS	False	None
/zh_CN/<path:path>	home.redirect_locale	GET, HEAD, OPTIONS	False	None
/zh_TW/	home.redirect_locale	GET, HEAD, OPTIONS	False	None
/zh_TW/<path:path>	home.redirect_locale	GET, HEAD, OPTIONS	False	None

Key	Value
__timer	1765178050.1472578
_csrf_token	Ijc3ZWM4OGVmNzcyMTE5N2VhMGExODhhZTMyYzA0MGUxNTI0NjIwMjEi.aTZ6wg.2bTAexDNzYHOsoZtXGx4Tuw80OM
_flask_babel	namespace(babel_domain=<Domain(None, ['ckan', 'ckanext-harvest', 'ckanext-excelforms', 'ckanext-dcat'])>, babel_locale=Locale('en'), babel_tzinfo=<UTC>)
_login_user	<ckan.model.user.AnonymousUser object at 0x7f9be5302950>
_webassets	{'style': [], 'script': [], 'included': {'ckanext_datastore/datastore', 'ckanext-excelforms/excelforms_datatables_buttons', 'ckanext_datastore/datastore_css', 'ckanext-harvest/harvest_css', 'css/main', 'vendor/bootstrap', 'vendor/select2-css', 'ckanext-scheming/scheming_css', 'vendor/vendor', 'base/main', 'ckanext-validation/report-js', 'base/ckan', 'vendor/fontawesome', 'vendor/htmx', 'ckanext-validation/report-css', 'ckanext-activity/activity', 'ckanext-tabledesigner/tabledesigner_css', 'vendor/jquery', 'ckanext-activity/activity-css'}}
author	192.168.151.34
blueprint	dataset_resource
csrf_field_name	_csrf_token
debug_toolbar	<flask_debugtoolbar.DebugToolbarExtension object at 0x7f9be115ece0>
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package	{'author': '', 'author_email': '', 'creator_user_id': '22a99e46-9eae-460a-9fbc-db3902214edc', 'id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'isopen': True, 'license_id': 'cc-by', 'license_title': 'Creative Commons Attribution', 'license_url': 'http://www.opendefinition.org/licenses/cc-by', 'maintainer': '', 'maintainer_email': '', 'metadata_created': '2025-08-23T04:01:03.987710', 'metadata_modified': '2025-08-23T04:02:36.369140', 'name': 'virusseq-sars-cov-2-genome-sequences', 'notes': "The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.\r\n\r\nAs SARS-CoV-2—the causative agent of COVID-19—spreads between individuals, the virus continues to mutate. Tracking these changes is possible through genome sequencing of the virus. This data contains the unaligned reads in .fasta format for all available Cancogen samples.\r\n\r\nThe `last_updated` column will change under these circumstances: 1) When a sample first has its lineage assigned; 2) When pangolin or its data versions are updated; 3) When a sample's data fasta file is updated. If pangolin data is updated and the lineage assigned remains the same, this column will still change.", 'num_resources': 1, 'num_tags': 3, 'organization': {'id': 'ecb65bab-51ed-4838-b374-939247dae79f', 'name': 'cidgoh', 'title': 'CIDGOH', 'type': 'organization', 'description': '', 'image_url': '', 'created': '2025-08-02T03:06:42.785354', 'is_organization': True, 'approval_status': 'approved', 'state': 'active'}, 'owner_org': 'ecb65bab-51ed-4838-b374-939247dae79f', 'private': False, 'state': 'active', 'title': 'VirusSeq SARS-CoV-2 Genome Sequences', 'type': 'dataset', 'url': '', 'version': '', 'resources': [{'cache_last_updated': None, 'cache_url': None, 'created': '2025-08-23T04:01:55.866618', 'datastore_active': False, 'datastore_contains_all_records_of_source_file': False, 'description': 'The mission of Canadian COVID Genomics Network (CanCOGeN) is to establish a coordinated pan-Canadian, cross-agency network for large-scale SARS-CoV-2 and human host sequencing to track viral origin, spread and evolution, characterize the role of human genetics in COVID-19 disease and to inform time-sensitive critical decision making relevant to health authorities across Canada during the pandemic. CanCOGeN’s VirusSeq project aims to sequence up to 150,000 viral samples from people testing positive for COVID-19 with more coordination of viral sequencing and associated clinical/epidemiological data collection between provinces and internationally. This effort will improve tracking of how the virus is changing and spreading, providing key data on virus transmission trends and changes in the virus that may impact viral detection or the effectiveness of treatments or vaccines.', 'format': '', 'hash': '', 'id': 'bb70fa9a-dc84-4832-b95a-15071ca2fc65', 'last_modified': None, 'metadata_modified': '2025-08-23T04:01:56.999557', 'mimetype': None, 'mimetype_inner': None, 'name': 'VirusSeq SARS-CoV-2 Genome Sequences', 'package_id': '515e0188-31d0-4459-bcbf-cde2024b62b1', 'position': 0, 'resource_type': None, 'size': None, 'state': 'active', 'url': 'https://genomecanada.ca/challenge-areas/cancogen/virusseq', 'url_type': '', 'has_views': False}], 'tags': [{'display_name': 'cancogen', 'id': '3aeddf1e-2486-4e19-bfa9-f0dcc7fbac40', 'name': 'cancogen', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'covid19', 'id': 'e750ab57-c92b-4bc0-b826-7fda43c6553c', 'name': 'covid19', 'state': 'active', 'vocabulary_id': None}, {'display_name': 'virusseq', 'id': '7b1a97a8-d161-468e-a1f0-986864590bc3', 'name': 'virusseq', 'state': 'active', 'vocabulary_id': None}], 'extras': [], 'groups': [], 'relationships_as_subject': [], 'relationships_as_object': []}
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